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MS Tools

H/D Exchange Calculator
Calculates number of exchangeable hydrogens, monoisotopic and average masses and displays a simple peptide statistics (example result)
H/D Experiment Planner
Creates a time schedule for H/D exchange experiments (example result)
Draw Map
Creates a graphical representation of protein sequence coverage (example result)
Draw H/D Heat Map
Draws graphical representation of H/D exchange using color gradients (heat maps) (example result)
Draw H/D Protection Plot
Creates a protection plot based on data from H/D exchange and allows comparison of various conditions (example result)
JMol Scripter
Visualization of H/D data on protein structure using JMol.
Draw H/D Exchange plots
Draws graphical representation of H/D exchange using plots

If you are using MS Tools use this citation in your papers please:
Kavan, D. and Man, P. "MSTools - Web based application for visualization and presentation of HXMS data" Int. J. Mass Spectrom. 2011, 302: 53-58. http://dx.doi.org/10.1016/j.ijms.2010.07.030.

Original MSTools could be found at http://ms.biomed.cas.cz/MSTools/ - Europe, The Czech Republic.

If you have any questions, please do not hesitate to contact us at: pman@biomed.cas.cz or kuan@natur.cuni.cz.